PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001393.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 202aa    MW: 21990.3 Da    PI: 6.8611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001393.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147294123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  Itr_sc001393.1_g00005.1 72 YPCTFCRREFRSAQALGGHMNVH 94
                             99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.25E-66999No hitNo description
PfamPF139121.0E-57296IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4487299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAHLGLASL SHSQLQNFAQ SHHTPAPPPD SASTAMWNPR NTAAEEQEEE DSWEIKAFEE  60
DTSNATWPPR CYPCTFCRRE FRSAQALGGH MNVHRRERAR LQLPTTTTTS AAAAGLCLLY  120
SLPNPNAAAA ANTNSSPRLL SVSPFAANSF PATPCITSPI HPSDSGDKSN NKNYRFGTRR  180
REPAIVEELD LELRLGCSSS SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A7e-126794229Transcriptional regulator SUPERMAN
1njq_A7e-126794229superman protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554111.13e-52PREDICTED: zinc finger protein JAGGED
TrEMBLB9S1F95e-47B9S1F9_RICCO; Palmate-like pentafoliata 1 transcription factor
STRINGPOPTR_0003s09000.12e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-25C2H2 family protein